From: The microbiome of the upper airways: focus on chronic rhinosinusitis
Author | Year | n | Sample | Techinque | Aureobacterium | Alicycliphilus | Burkholderia | Carnobacterium | Citrobacter | Cloacibacterium | Corynebacterium | Curtobacterium | Cyanobacterium | Diaphorobacter | Enterobacter | Enterococcus | Fusobacterium | Haemophilus | Helicobacter | Lachnospira | Lactobacillus | Micrococcus | Moraxella | Mycobacterium | Neisseria | Pediococcus | Peptoniphilus | Propionibacterium | Pseudomonas | Rhodococcus | Staphylococcus | Stenotrophomonas | Streptococcus | Ref. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Ramakrishnan VR et al.* | 2013 | 28 healthy | Middle meatus swab | qPCR 16S rRNA pyrosequencing | Â | Â | Â | Â | Â | Â | x | Â | Â | Â | x | Â | x | x | Â | Â | Â | Â | x | Â | x | Â | Â | x | Â | Â | x | x | x | [61] |
Aurora R et al. | 2013 | 30 CRS 12 healthy | Superior middle meatus lavage | 16S rRNA pyrosequencing | Â | x | Â | Â | Â | x | x | x | x | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | [62] |
Boase S et al.** | 2013 | 38 CRS 6 healthy | Mucus Middle meatus swab | Conventional culture Ibis T5000 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x | Â | Â | x | Â | Â | [18] |
Abreu NA et al. | 2012 | 10 CRS 10 healthy | Brush samples of mucosal surfaces of the lateral, central, and medial portions of the maxillary sinus | PhyloChip analysis | Â | Â | x | x | Â | Â | x | Â | Â | Â | Â | x | Â | Â | x | x | x | Â | Â | x | Â | x | Â | Â | x | Â | Â | Â | Â | [17] |
Feazel LM et al.** | 2012 | 15 CRS 5 healthy | Middle meatus swabs | Conventional culture 16S rRNA pyrosequences | Â | Â | Â | Â | Â | Â | x | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x | Â | Â | x | Â | Â | [56] |
Stressmann FA et al.*** | 2011 | 43 CRS. | Polyp and inferior turbinate tissue. Mucin (if present) | 16S rRNA pyrosequencing T-RFLP | Â | Â | Â | Â | x | Â | Â | Â | Â | Â | Â | Â | Â | x | Â | Â | Â | Â | Â | Â | Â | Â | Â | x | x | Â | x | Â | x | [55] |
Frank DN et al.**** | 2010 | 26 S. aureus carriers 16 non-carriers 5 healthy | Nostril swabs | 16S rRNA pyrosequencing | Â | Â | Â | Â | Â | Â | x | Â | Â | Â | x | x | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x | Â | Â | x | Â | Â | [63] |
Stephenson MF et al.***** | 2010 | 18 CRS 9 healthy | Mucosal Biopsy | 16 s rRNA pyrosequencing | Â | Â | Â | Â | Â | Â | Â | Â | Â | x | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x | Â | Â | Â | x | Â | Â | [60] |
Healy DY et al.****** | 2008 | 11 CRS 3 healthy | Mucosa samples | FISH DNA probes Haemophilus influenzae Streptococcus pneumophilia Staphylococcus aureus Pseudomonas aeruginosa | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x | Â | x | Â | x | [64] |
Sanderson AR et al.******* | 2006 | 18 CRS 5 healthy | Biopsies of the sinus mucosa | FISH DNA probes Haemophilus influenzae Streptococcus pneumophilia Staphylococcus aureus Pseudomonas aeruginosa | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x | Â | x | Â | x | [65] |
Lina G et al.******** | 2003 | 216 healthy | Nasal vestibule swabs | Conventional culture | Â | Â | Â | Â | Â | Â | x | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x | Â | Â | Â | Â | Â | Â | Â | Â | x | Â | x | [66] |
Rasmussen TT et al.********* | 2000 | 10 healthy | Nasal washes | Conventional culture Capillary sequencing | x | Â | Â | Â | Â | Â | x | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x | x | Â | Â | [67] |