From: The microbiome of the upper airways: focus on chronic rhinosinusitis
Author | Year | n | Sample | Techinque | Achromobacter | Actinomyces | Atopobium | Bacteroidetes | Burkholderia | Campylobacter | Capnocytophaga | Craurococcus | Fusobacterium | Granulicatella | Haemophilus | Lactobacillus | Leptotrichia | Ochrobactrum | Peptostreptococcus | Porphyromonas | Prevotella | Pseudomonas | Rhizobium | Rothia | Staphylococcus | Stenotrophomonas | Streptococcus | Veillonella | Ref. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Salipante SJ * | 2013 | 60 CF | Sputum | 16 s rRNA pyrosequencing | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x | Â | Â | Â | Â | Â | Â | x | Â | Â | Â | x | x | Â | [49] |
Zemanick ET | 2013 | 37 CF | Sputum | Conventional culture 16S rRNA pyrosequencing | Â | x | x | Â | Â | x | x | Â | x | x | Â | x | x | Â | Â | x | x | x | Â | x | x | Â | x | x | [35] |
Delhaes L | 2012 | 8 CF | Sputum | Conventional culture 16S rRNA pyrosequencing | Â | Â | Â | Â | Â | Â | Â | Â | x | Â | x | Â | Â | Â | Â | x | x | x | Â | Â | Â | Â | x | x | [39] |
Fodor AA | 2012 | 23 CF | Sputum | 16S rRNA pyrosequencing | Â | Â | Â | Â | x | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x | x | Â | x | Â | Â | x | x | [37] |
Stressmann FA ** | 2012 | 14 CF | Sputum | Conventional culture analysis T-RFLP | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x | Â | Â | x | x | x | Â | [44] |
Zhao J | 2012 | 6 CF | Sputum | 16 s rRNA pyrosequencing | Â | Â | Â | Â | Â | Â | Â | Â | x | Â | Â | Â | Â | Â | Â | Â | x | x | Â | x | Â | Â | x | x | [41] |
Guss AM | 2011 | 4 CF | Sputum | 16 s rRNA pyrosequencing | Â | x | Â | x | Â | Â | Â | Â | x | Â | Â | Â | Â | Â | Â | x | x | Â | Â | x | Â | Â | x | x | [50] |
Sibley CD | 2011 | 6 CF | Sputum | Conventional culture T-RFLP 16S rRNA pyrosequencing | x | x | Â | x | x | Â | Â | Â | Â | Â | x | Â | Â | Â | Â | Â | x | x | Â | Â | x | x | x | x | [51] |
Cox MJ*** | 2010 | 63 CF | Sputum Throat swab | Microarray | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x | Â | Â | x | Â | Â | Â | [52] |
J Harris JK **** | 2007 | 28 CF 14 healthy | Bronchoalveolar lavage fluid | DGGE/TGGE | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x | Â | Â | Â | Â | Â | Â | x | Â | Â | x | Â | x | Â | [53] |
Rogers GB ***** | 2004 | 34 CF | Sputum | T-RFLP | Â | Â | Â | Â | Â | Â | Â | x | Â | Â | Â | Â | Â | x | x | x | x | x | x | Â | Â | Â | Â | Â | [54] |